My Autossomal HarappaWorld
Admixture Proportions
 |
| GENY DOS SANTOS FLORENTINO |
HarappaWorld Admixture Proportions
This utility uses the HarappaWorld model, created by Zack. Questions and comments about this model
should be directed to him at harappa@zackvision.com or to his HarappaWorld blog.
We appreciate him making this excellent tool available here.
Kit Number: F229750 Iteration: 1000 Delta-Q: 2.039842e-01 Elapsed Time: 88.38 seconds
|  |
Genealogy and DNA data remains the property of the submitter.
Each Admixture Proportions 'calculator' model remains the property of its developer.
GEDmatch.Com
Oracle
This program is based on
'Oracle v1' by Dienekes Pontikos. His original program was
developed as part of the Dodecad Ancestry
Project. More
information on Dienekes' orignal program can be found here.
Many thanks also to Zack Ajmal for helping us get this web version of Dienekes' Oracle program developed.
Many thanks also to Zack Ajmal for helping us get this web version of Dienekes' Oracle program developed.
HarappaWorld
Oracle results:
23 April 2013 - Oracle
reference population percentages revised.
Kit F229750
Admix Results (sorted):
Kit F229750
Admix Results (sorted):
#
|
Population
|
Percent
|
1
|
W-African
|
79.07
|
2
|
E-African
|
5.4
|
3
|
Pygmy
|
4.67
|
4
|
Mediterranean
|
2.82
|
5
|
NE-Euro
|
2.8
|
6
|
San
|
1.53
|
7
|
American
|
1.12
|
8
|
Baloch
|
0.79
|
9
|
Caucasian
|
0.77
|
10
|
Siberian
|
0.3
|
11
|
S-Indian
|
0.27
|
12
|
Beringian
|
0.24
|
13
|
Papuan
|
0.21
|
Single Population Sharing:
#
|
Population
(source)
|
Distance
|
1
|
fang
(henn2012)
|
8.06
|
2
|
kongo
(henn2012)
|
8.92
|
3
|
african-caribbean
(1000genomes)
|
8.93
|
4
|
kaba
(henn2012)
|
9.74
|
5
|
african-american
(1000genomes)
|
9.78
|
6
|
bamoun
(henn2012)
|
10.69
|
7
|
mandenka
(hgdp)
|
15.11
|
8
|
hausa
(henn2012)
|
15.76
|
9
|
igbo
(henn2012)
|
18
|
10
|
bambaran
(xing)
|
18.64
|
11
|
brong
(henn2012)
|
19.42
|
12
|
bantusouthafrica
(hgdp)
|
19.96
|
13
|
dogon
(xing)
|
20.46
|
14
|
pedi
(xing)
|
20.66
|
15
|
yoruba
(hgdp)
|
21.75
|
16
|
yoruba
(hapmap)
|
21.81
|
17
|
nguni (xing)
|
22.2
|
18
|
yoruba
(1000genomes)
|
22.47
|
19
|
fulani
(henn2012)
|
28.39
|
20
|
bantukenya
(hgdp)
|
28.63
|
Mixed Mode Population Sharing:
#
|
Primary
Population (source)
|
Secondary
Population (source)
|
Distance
|
|||||
1
|
85.4%
|
african-caribbean
(1000genomes)
|
+
|
14.6%
|
alur
(xing)
|
@
|
1.76
|
|
2
|
77.1%
|
african-caribbean
(1000genomes)
|
+
|
22.9%
|
bantukenya
(hgdp)
|
@
|
2.81
|
|
3
|
82.5%
|
bamoun
(henn2012)
|
+
|
17.5%
|
dominican
(bryc)
|
@
|
2.82
|
|
4
|
52.5%
|
kongo
(henn2012)
|
+
|
47.5%
|
african-american
(1000genomes)
|
@
|
2.86
|
|
5
|
78.3%
|
african-caribbean
(1000genomes)
|
+
|
21.7%
|
luhya
(1000genomes)
|
@
|
2.91
|
|
6
|
88.6%
|
bamoun
(henn2012)
|
+
|
11.4%
|
puerto-rican
(1000genomes)
|
@
|
2.97
|
|
7
|
91.7%
|
african-caribbean
(1000genomes)
|
+
|
8.3%
|
hadza
(henn2011)
|
@
|
3.22
|
|
8
|
87%
|
african-caribbean
(1000genomes)
|
+
|
13%
|
hema
(xing)
|
@
|
3.23
|
|
9
|
90.3%
|
bamoun
(henn2012)
|
+
|
9.7%
|
french
(hgdp)
|
@
|
3.32
|
|
10
|
90.4%
|
african-caribbean
(1000genomes)
|
+
|
9.6%
|
sandawe
(henn2011)
|
@
|
3.32
|
|
11
|
90.2%
|
bamoun
(henn2012)
|
+
|
9.8%
|
spaniard
(1000genomes)
|
@
|
3.36
|
|
12
|
90.1%
|
bamoun
(henn2012)
|
+
|
9.9%
|
italian
(hgdp)
|
@
|
3.37
|
|
13
|
89.4%
|
bamoun
(henn2012)
|
+
|
10.6%
|
colombian
(1000genomes)
|
@
|
3.43
|
|
14
|
55.7%
|
fang
(henn2012)
|
+
|
44.3%
|
african-american
(1000genomes)
|
@
|
3.45
|
|
15
|
90.1%
|
bamoun
(henn2012)
|
+
|
9.9%
|
romanian-a
(behar)
|
@
|
3.49
|
|
16
|
90.3%
|
bamoun
(henn2012)
|
+
|
9.7%
|
hungarian
(behar)
|
@
|
3.56
|
|
17
|
90.1%
|
bamoun
(henn2012)
|
+
|
9.9%
|
tuscan
(hapmap)
|
@
|
3.58
|
|
18
|
52.5%
|
african-american
(1000genomes)
|
+
|
47.5%
|
bamoun
(henn2012)
|
@
|
3.59
|
|
19
|
90.5%
|
bamoun
(henn2012)
|
+
|
9.5%
|
utahn-white
(1000genomes)
|
@
|
3.59
|
|
20
|
90.1%
|
bamoun
(henn2012)
|
+
|
9.9%
|
bulgarian
(yunusbayev)
|
@
|
3.6
|
|
Gedmatch.Com
HarappaWorld
4-Ancestors Oracle
This program is based on
4-Ancestors Oracle Version 0.96 by Alexandr Burnashev.
Questions about results should be sent to him at: Alexandr.Burnashev@gmail.com
Original concept proposed by Sergey Kozlov.
Many thanks to Alexandr for helping us get this web version developed.
Revised: Dec 6, 2012
16 components mode.
Component threshold auto-set to 0.760%. Admix results below that value will not be considered.
Kit Number: F229750
Admix Results (sorted):
Questions about results should be sent to him at: Alexandr.Burnashev@gmail.com
Original concept proposed by Sergey Kozlov.
Many thanks to Alexandr for helping us get this web version developed.
Revised: Dec 6, 2012
16 components mode.
Component threshold auto-set to 0.760%. Admix results below that value will not be considered.
Kit Number: F229750
Admix Results (sorted):
#
|
Population
|
Percent
|
1
|
W-African
|
79.89
|
2
|
E-African
|
5.46
|
3
|
Pygmy
|
4.72
|
4
|
Mediterranean
|
2.84
|
5
|
NE-Euro
|
2.83
|
6
|
San
|
1.55
|
7
|
American
|
1.14
|
8
|
Baloch
|
0.80
|
9
|
Caucasian
|
0.78
|
--------------------------------
Least-squares method.
Using 1 population approximation:
1 fang @ 7.246
2 kongo @ 8.085
3 african-caribbean @ 8.230
4 bamoun @ 9.892
5 kaba @ 9.950
6 african-american @ 10.638
7 mandenka @ 14.089
8 hausa @ 14.700
9 igbo @ 17.024
10 bambaran @ 17.574
377 iterations.
Using 2 populations approximation:
1 50% african-american +50% kongo @ 2.983
2 50% african-american +50% bamoun @ 3.457
3 50% african-american +50% fang @ 3.912
4 50% african-caribbean +50% kaba @ 4.598
5 50% african-american +50% kaba @ 4.737
6 50% african-caribbean +50% fang @ 5.179
7 50% african-american +50% hausa @ 5.409
8 50% african-american +50% mandenka @ 5.441
9 50% african-american +50% african-caribbean @ 6.485
10 50% african-caribbean +50% kongo @ 6.571
71253 iterations.
Using 3 populations approximation:
1 50% african-american +25% bamoun +25% kaba @ 2.397
2 50% african-caribbean +25% african-caribbean +25% bantukenya @ 2.759
3 50% african-american +25% kaba +25% kongo @ 2.776
4 50% african-american +25% hausa +25% kaba @ 2.855
5 50% african-american +25% igbo +25% kaba @ 2.857
6 50% african-american +25% kaba +25% mandenka @ 2.945
7 50% kongo +25% african-american +25% kaba @ 2.950
8 50% african-american +25% fang +25% hausa @ 2.979
9 50% african-american +25% kongo +25% kongo @ 2.983
10 50% kongo +25% african-american +25% african-american @ 2.983
Gedmatch.Com
HarappaWorld
Oracle-x Population Fitting
This program is based on
Larry Smiser's Population Fitting spreadsheet.
Questions about the method or results should be sent to him at lwsmiser@gmail.com
Finished reading population data. 377 populations found.
16 population clusters.
Kit Number: F229750
Admix Results:
Questions about the method or results should be sent to him at lwsmiser@gmail.com
Finished reading population data. 377 populations found.
16 population clusters.
Kit Number: F229750
Admix Results:
#
|
Population
|
Percent
|
1
|
S-Indian
|
0.27
|
2
|
Baloch
|
0.79
|
3
|
Caucasian
|
0.77
|
4
|
NE-Euro
|
2.80
|
5
|
SE-Asian
|
0.00
|
6
|
Siberian
|
0.30
|
7
|
NE-Asian
|
0.00
|
8
|
Papuan
|
0.21
|
9
|
American
|
1.12
|
10
|
Beringian
|
0.24
|
11
|
Mediterranean
|
2.82
|
12
|
SW-Asian
|
0.00
|
13
|
San
|
1.53
|
14
|
E-African
|
5.40
|
15
|
Pygmy
|
4.67
|
16
|
W-African
|
79.07
|
Pct. Calc. Option 2
0
|
Unable
to determine
|
0.67%
|
1
|
bamoun
|
45.70%
|
2
|
mandenka
|
37.43%
|
3
|
french
|
5.96%
|
4
|
bulala
|
5.66%
|
5
|
nguni
|
2.56%
|
6
|
pygmy
|
1.04%
|
7
|
pima
|
0.97%
|
8
|
luhya
|
0.01%
|
9
|
ariblacksmith
|
0.00%
|
10
|
mada
|
0.00%
|
Total RMSD: 0.366722
Elapsed time 3.9261 seconds.
