sábado, 29 de março de 2014

My Autossomal Dodecad K12b Admixture Proportions

GENY DOS SANTOS FLORENTINO


My Autossomal Dodecad K12b Admixture Proportions


The K12b admixture calculator is courtesy of Dienekes Pontikos and was developed as part of the Dodecad Ancestry Project; more information here.

Kit Number: F229750   Iteration: 1000   Delta-Q: 3.423992e-01   Elapsed Time: 65.70 seconds



Population
Gedrosia0.71%
Siberian1.22%
Northwest_African1.79%
Southeast_Asian-    
Atlantic_Med1.16%
North_European3.40%
South_Asian0.26%
East_African9.03%
Southwest_Asian-    
East_Asian-    
Caucasus0.76%
Sub_Saharan81.67%



GEDmatch.Com Oracle
This program is based on 'Oracle v1' by Dienekes Pontikos. His original program was developed as part of the Dodecad Ancestry Project. More information on Dienekes' orignal program can be found here.

Many thanks also to 
Zack Ajmal for helping us get this web version of Dienekes' Oracle program developed.


Dodecad K12b Oracle results:
The GEDmatch version of Oracle may give slightly different results from Dienekes version. The GEDmatch version uses FST weighting in its calculations.

Kit F229750

Admix Results (sorted):

#
Population
Percent
1
Sub_Saharan
81.67
2
East_African
9.03
3
North_European
3.4
4
Northwest_African
1.79
5
Siberian
1.22
6
Atlantic_Med
1.16
7
Caucasus
0.76
8
Gedrosia
0.71
9
South_Asian
0.26

Single Population Sharing:

#
Population (source)
Distance
1
Bantu_S.E._Tswana (HGDP)
9.02
2
ASW30 (HapMap3)
9.97
3
Bantu_S.W._Herero (HGDP)
12.36
4
Bantu_N.E. (HGDP)
16.14
5
LWK30 (Behar)
18.56
6
Mandenka (HGDP)
21.85
7
Yoruba (HGDP)
24.84
8
YRI30 (HGDP)
24.84
9
MKK30 (Dodecad)
88.94
10
Sandawe_He (Henn)
90.76
11
Yemenese (Behar)
98.92
12
Algerian (Dodecad)
99.43
13
Moroccans (Behar)
100.98
14
Egyptans (Behar)
102.51
15
Moroccan (Dodecad)
105.5
16
Jordanians (Behar)
107.17
17
Uzbeks (Behar)
107.41
18
Turkmens (Yunusbayev)
107.6
19
Palestinian (HGDP)
107.8
20
Tajiks (Yunusbayev)
107.82

Mixed Mode Population Sharing:

#

Primary Population (source)
Secondary Population (source)
Distance
1

90.4%
Bantu_S.W._Herero (HGDP)
+
9.6%
Chuvashs (Behar)
@
2.9
2

62.6%
ASW30 (HapMap3)
+
37.4%
Bantu_N.E. (HGDP)
@
3.18
3

90.4%
Bantu_S.W._Herero (HGDP)
+
9.6%
Hungarians (Behar)
@
3.21
4

90.3%
Bantu_S.W._Herero (HGDP)
+
9.7%
Romanians (Behar)
@
3.37
5

93.1%
Bantu_S.E._Tswana (HGDP)
+
6.9%
Chuvashs (Behar)
@
3.4
6

90.5%
Bantu_S.W._Herero (HGDP)
+
9.5%
German (Dodecad)
@
3.4
7

90.3%
Bantu_S.W._Herero (HGDP)
+
9.7%
Bulgarian (Dodecad)
@
3.41
8

66.1%
ASW30 (HapMap3)
+
33.9%
LWK30 (Behar)
@
3.41
9

90.7%
Bantu_S.W._Herero (HGDP)
+
9.3%
Mordovians (Yunusbayev)
@
3.44
10

90.3%
Bantu_S.W._Herero (HGDP)
+
9.7%
Bulgarians (Yunusbayev)
@
3.48
11

90.8%
Bantu_S.W._Herero (HGDP)
+
9.2%
Russian (HGDP)
@
3.51
12

93.3%
Bantu_S.E._Tswana (HGDP)
+
6.7%
Mordovians (Yunusbayev)
@
3.56
13

93.4%
Bantu_S.E._Tswana (HGDP)
+
6.6%
Russian (HGDP)
@
3.57
14

90.7%
Bantu_S.W._Herero (HGDP)
+
9.3%
Ukranians (Yunusbayev)
@
3.6
15

90.5%
Bantu_S.W._Herero (HGDP)
+
9.5%
Mixed_Germanic (Dodecad)
@
3.6
16

93.1%
Bantu_S.E._Tswana (HGDP)
+
6.9%
Hungarians (Behar)
@
3.63
17

90.8%
Bantu_S.W._Herero (HGDP)
+
9.2%
Mixed_Slav (Dodecad)
@
3.65
18

93.4%
Bantu_S.E._Tswana (HGDP)
+
6.6%
Mixed_Slav (Dodecad)
@
3.66
19

93.4%
Bantu_S.E._Tswana (HGDP)
+
6.6%
Ukranians (Yunusbayev)
@
3.67
20

90.6%
Bantu_S.W._Herero (HGDP)
+
9.4%
Dutch (Dodecad)
@
3.67
Gedmatch.Com
Dodecad K12b 4-Ancestors Oracle
This program is based on 4-Ancestors Oracle Version 0.96 by Alexandr Burnashev.
Questions about results should be sent to him at: Alexandr.Burnashev@gmail.com
Original concept proposed by Sergey Kozlov.
Many thanks to Alexandr for helping us get this web version developed.

Revised: Dec 6, 2012

12 components mode.
Component threshold auto-set to 1.010%. Admix results below that value will not be considered.


Kit Number: F229750

Admix Results (sorted):

#
Population
Percent
1
Sub_Saharan
83.11
2
East_African
9.19
3
North_European
3.46
4
Northwest_African
1.82
5
Siberian
1.24
6
Atlantic_Med
1.18



--------------------------------

Least-squares method.

Using 1 population approximation:
1 Bantu_S.E._Tswana @ 6.963
2 Bantu_S.E._Pedi @ 7.000
3 Bantu_S.E._Zulu @ 7.735
4 Bantu_S.E._S.Sotho @ 8.003
5 Bantu_S.W._Herero @ 9.159
6 ASW30 @ 9.553
7 Bantu_S.W._Ovambo @ 11.668
8 Bantu_N.E. @ 15.185
9 LWK30 @ 17.359
10 Mandenka @ 17.368
223 iterations.



Using 2 populations approximation:
1 50% ASW30 +50% Bantu_S.E._Tswana @ 4.246
2 50% ASW30 +50% Bantu_S.E._Pedi @ 4.355
3 50% ASW30 +50% Bantu_N.E. @ 4.776
4 50% ASW30 +50% Bantu_S.E._Zulu @ 5.341
5 50% ASW30 +50% Bantu_S.E._S.Sotho @ 5.585
6 50% ASW30 +50% LWK30 @ 5.801
7 50% LWK30 +50% Mandenka @ 5.950
8 50% Bantu_N.E. +50% Mandenka @ 6.131
9 50% ASW30 +50% Bantu_S.W._Herero @ 6.466
10 50% Bantu_S.E._Tswana +50% Bantu_S.E._Tswana @ 6.963
24976 iterations.



Using 3 populations approximation:
1 50% ASW30 +25% Bantu_S.E._S.Sotho +25% LWK30 @ 2.751
2 50% ASW30 +25% Bantu_S.E._Zulu +25% LWK30 @ 2.761
3 50% ASW30 +25% Bantu_N.E. +25% Bantu_S.E._Pedi @ 2.761
4 50% ASW30 +25% Bantu_N.E. +25% Bantu_S.E._Tswana @ 2.769
5 50% ASW30 +25% Bantu_N.E. +25% Bantu_S.E._Zulu @ 2.769
6 50% ASW30 +25% Bantu_S.W._Herero +25% LWK30 @ 2.774
7 50% ASW30 +25% Bantu_N.E. +25% Bantu_S.E._S.Sotho @ 2.790
8 50% ASW30 +25% Bantu_S.E._Pedi +25% LWK30 @ 2.882
9 50% ASW30 +25% Bantu_S.E._Tswana +25% LWK30 @ 2.904
10 50% ASW30 +25% Bantu_N.E. +25% Bantu_S.W._Herero @ 2.916
369043 iterations.



Using 4 populations approximation:
1 ASW30 + ASW30 + Bantu_S.E._S.Sotho + LWK30 @ 2.751
2 ASW30 + ASW30 + Bantu_S.E._Zulu + LWK30 @ 2.761
3 ASW30 + ASW30 + Bantu_N.E. + Bantu_S.E._Pedi @ 2.761
4 ASW30 + ASW30 + Bantu_N.E. + Bantu_S.E._Tswana @ 2.769
5 ASW30 + ASW30 + Bantu_N.E. + Bantu_S.E._Zulu @ 2.769
6 ASW30 + ASW30 + Bantu_S.W._Herero + LWK30 @ 2.774
7 ASW30 + ASW30 + Bantu_N.E. + Bantu_S.E._S.Sotho @ 2.790
8 ASW30 + ASW30 + Bantu_S.E._Pedi + LWK30 @ 2.882
9 ASW30 + ASW30 + Bantu_S.E._Tswana + LWK30 @ 2.904
10 ASW30 + ASW30 + Bantu_N.E. + Bantu_S.W._Herero @ 2.916
11 ASW30 + ASW30 + Bantu_S.W._Ovambo + LWK30 @ 3.008
12 ASW30 + ASW30 + Bantu_N.E. + Bantu_S.W._Ovambo @ 3.298
13 ASW30 + Bantu_N.E. + Bantu_N.E. + Mandenka @ 3.672
14 ASW30 + ASW30 + LWK30 + Mandenka @ 3.885
15 ASW30 + Bantu_S.E._Tswana + LWK30 + Mandenka @ 3.897
16 ASW30 + Bantu_N.E. + LWK30 + Mandenka @ 3.910
17 ASW30 + Bantu_S.E._Pedi + LWK30 + Mandenka @ 3.930
18 ASW30 + Bantu_S.E._Tswana + Bantu_S.W._Ovambo + LWK30 @ 4.036
19 ASW30 + Bantu_S.E._S.Sotho + Bantu_S.W._Herero + LWK30 @ 4.036
20 ASW30 + Bantu_N.E. + Bantu_S.E._S.Sotho + Bantu_S.E._S.Sotho @ 4.036
5362352 iterations.

Done.

Elapsed time 6.0168 seconds.
Gedmatch.Com
Dodecad K12b Oracle-x Population Fitting
This program is based on Larry Smiser's Population Fitting spreadsheet.
Questions about the method or results should be sent to him at lwsmiser@gmail.com


Finished reading population data.
223 populations found.
12 population clusters.

Kit Number: F229750

Admix Results:

#
Population
Percent
1
Gedrosia
0.71
2
Siberian
1.22
3
Northwest_African
1.79
4
Southeast_Asian
0.00
5
Atlantic_Med
1.16
6
North_European
3.40
7
South_Asian
0.26
8
East_African
9.03
9
Southwest_Asian
0.00
10
East_Asian
0.00
11
Caucasus
0.76
12
Sub_Saharan
81.67


Pct. Calc. Option 2

0
Unable to determine
0.16%
1
Bantu_S.W._Herero
50.35%
2
Bantu_S.E._Tswana
35.22%
3
Chuvashs
5.61%
4
Mandenka
4.17%
5
Algerian
2.01%
6
Moroccan
0.93%
7
LWK30
0.79%
8
Mordovians
0.36%
9
Moroccans
0.33%
10
Bantu_N.E.
0.03%

Total RMSD: 0.276845


Elapsed time 0.7695 seconds.

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