sábado, 29 de março de 2014

My Autossomal Dodecad K7b Admixture Proportions

My Autossomal Dodecad K7b Admixture Proportions

GENY DOS SANTOS FLORENTINO

My Autossomal Dodecad K7b Admixture Proportions


The K7b admixture calculator is courtesy of Dienekes Pontikos and was developed as part of the Dodecad Ancestry Project; more information here.

K7b is an update of the eurasia7 calculator. It has been built on exactly the same dataset as K12b but at a lower (K=7) level of detail.

Kit Number: F229750   Iteration: 1000   Delta-Q: 6.843454e-04   Elapsed Time: 44.52 seconds



Population
South_Asian0.25%
West_Asian1.56%
Siberian1.16%
African89.79%
Southern2.03%
Atlantic_Baltic5.21%
East_Asian-    



GEDmatch.Com Oracle
This program is based on 'Oracle v1' by Dienekes Pontikos. His original program was developed as part of the Dodecad Ancestry Project. More information on Dienekes' orignal program can be found here.

Many thanks also to 
Zack Ajmal for helping us get this web version of Dienekes' Oracle program developed.


Dodecad K7b Oracle results:
The GEDmatch version of Oracle may give slightly different results from Dienekes version. The GEDmatch version uses FST weighting in its calculations.

Kit F229750

Admix Results (sorted):

#
Population
Percent
1
African
89.79
2
Atlantic_Baltic
5.21
3
Southern
2.03
4
West_Asian
1.56
5
Siberian
1.16
6
South_Asian
0.25

Single Population Sharing:

#
Population (source)
Distance
1
ASW30 (HapMap3)
8.56
2
LWK30 (Behar)
9.44
3
Bantu_N.E. (HGDP)
10.28
4
Mandenka (HGDP)
12.61
5
Bantu_S.E._Tswana (HGDP)
13.01
6
Bantu_S.W._Herero (HGDP)
13.18
7
Yoruba (HGDP)
13.64
8
YRI30 (HGDP)
13.64
9
Sandawe (Henn)
22.16
10
MKK30 (Dodecad)
27.58
11
Somali (Dodecad)
59.64
12
Ethiopian_Jews (Behar)
71.16
13
Ethiopians (Behar)
72.82
14
Moroccans (Behar)
98.45
15
Mozabite (HGDP)
100.1
16
Algerian (Dodecad)
100.59
17
Yemenese (Behar)
102.83
18
Egyptans (Behar)
103.5
19
Moroccan (Dodecad)
104.72
20
Palestinian (HGDP)
114.97

Mixed Mode Population Sharing:

#

Primary Population (source)
Secondary Population (source)
Distance
1

92.5%
Bantu_N.E. (HGDP)
+
7.5%
Mordovians (Yunusbayev)
@
0.8
2

92.6%
Bantu_N.E. (HGDP)
+
7.4%
Russian (HGDP)
@
0.91
3

92.6%
Bantu_N.E. (HGDP)
+
7.4%
Russian_B (Behar)
@
1.16
4

90.4%
Bantu_S.E._Tswana (HGDP)
+
9.6%
Romanians (Behar)
@
1.16
5

90.4%
Bantu_S.E._Tswana (HGDP)
+
9.6%
Bulgarians (Yunusbayev)
@
1.18
6

92.3%
Bantu_N.E. (HGDP)
+
7.7%
Chuvashs (Behar)
@
1.21
7

90.4%
Bantu_S.E._Tswana (HGDP)
+
9.6%
Bulgarian (Dodecad)
@
1.22
8

90%
Yoruba (HGDP)
+
10%
Romanians (Behar)
@
1.27
9

90%
YRI30 (HGDP)
+
10%
Romanians (Behar)
@
1.27
10

90%
Yoruba (HGDP)
+
10%
Bulgarians (Yunusbayev)
@
1.3
11

90%
YRI30 (HGDP)
+
10%
Bulgarians (Yunusbayev)
@
1.3
12

90.3%
Bantu_S.W._Herero (HGDP)
+
9.7%
Romanians (Behar)
@
1.3
13

90.7%
Mandenka (HGDP)
+
9.3%
Romanians (Behar)
@
1.31
14

90.3%
Bantu_S.W._Herero (HGDP)
+
9.7%
Bulgarians (Yunusbayev)
@
1.33
15

89.9%
Yoruba (HGDP)
+
10.1%
Bulgarian (Dodecad)
@
1.33
16

89.9%
YRI30 (HGDP)
+
10.1%
Bulgarian (Dodecad)
@
1.33
17

92.6%
Bantu_N.E. (HGDP)
+
7.4%
Mixed_Slav (Dodecad)
@
1.34
18

92.8%
Bantu_N.E. (HGDP)
+
7.2%
FIN30 (1000Genomes)
@
1.34
19

90.7%
Mandenka (HGDP)
+
9.3%
Bulgarians (Yunusbayev)
@
1.35
20

92.8%
Bantu_N.E. (HGDP)
+
7.2%
Finnish (Dodecad)
@
1.36
Gedmatch.Com
Dodecad K7b 4-Ancestors Oracle
This program is based on 4-Ancestors Oracle Version 0.96 by Alexandr Burnashev.
Questions about results should be sent to him at: Alexandr.Burnashev@gmail.com
Original concept proposed by Sergey Kozlov.
Many thanks to Alexandr for helping us get this web version developed.

Revised: Dec 6, 2012

7 components mode.
Component threshold auto-set to 1.720%. Admix results below that value will not be considered.


Kit Number: F229750

Admix Results (sorted):

#
Population
Percent
1
African
92.54
2
Atlantic_Baltic
5.37
3
Southern
2.09


--------------------------------

Least-squares method.

Using 1 population approximation:
1 LWK30 @ 6.649
2 Bantu_N.E. @ 7.062
3 Mandenka @ 8.560
4 Bantu_S.E._Tswana @ 8.920
5 Bantu_S.W._Herero @ 9.116
6 Bantu_S.E._Zulu @ 9.194
7 Bantu_S.E._Pedi @ 9.425
8 Bantu_S.E._S.Sotho @ 9.425
9 Bantu_S.W._Ovambo @ 9.425
10 Yoruba @ 9.425
223 iterations.



Using 2 populations approximation:
1 50% ASW30 +50% Mandenka @ 1.815
2 50% ASW30 +50% Bantu_N.E. @ 1.824
3 50% ASW30 +50% Bantu_S.E._Pedi @ 1.983
4 50% ASW30 +50% Bantu_S.E._S.Sotho @ 1.983
5 50% ASW30 +50% Bantu_S.W._Ovambo @ 1.983
6 50% ASW30 +50% Yoruba @ 1.983
7 50% ASW30 +50% YRI30 @ 1.983
8 50% ASW30 +50% Bantu_S.E._Zulu @ 1.997
9 50% ASW30 +50% Bantu_S.E._Tswana @ 2.043
10 50% ASW30 +50% Bantu_S.W._Herero @ 2.044
24976 iterations.



Using 3 populations approximation:
1 50% ASW30 +25% Bantu_S.E._Pedi +25% LWK30 @ 1.622
2 50% ASW30 +25% Bantu_S.E._S.Sotho +25% LWK30 @ 1.622
3 50% ASW30 +25% Bantu_S.W._Ovambo +25% LWK30 @ 1.622
4 50% ASW30 +25% LWK30 +25% Yoruba @ 1.622
5 50% ASW30 +25% LWK30 +25% YRI30 @ 1.622
6 50% ASW30 +25% Bantu_N.E. +25% Bantu_S.E._Pedi @ 1.636
7 50% ASW30 +25% Bantu_N.E. +25% Bantu_S.E._S.Sotho @ 1.636
8 50% ASW30 +25% Bantu_N.E. +25% Bantu_S.W._Ovambo @ 1.636
9 50% ASW30 +25% Bantu_N.E. +25% Yoruba @ 1.636
10 50% ASW30 +25% Bantu_N.E. +25% YRI30 @ 1.636
369110 iterations.



Using 4 populations approximation:
1 ASW30 + ASW30 + Bantu_S.E._Pedi + LWK30 @ 1.622
2 ASW30 + ASW30 + Bantu_S.E._S.Sotho + LWK30 @ 1.622
3 ASW30 + ASW30 + Bantu_S.W._Ovambo + LWK30 @ 1.622
4 ASW30 + ASW30 + LWK30 + Yoruba @ 1.622
5 ASW30 + ASW30 + LWK30 + YRI30 @ 1.622
6 ASW30 + ASW30 + Bantu_N.E. + Bantu_S.E._Pedi @ 1.636
7 ASW30 + ASW30 + Bantu_N.E. + Bantu_S.E._S.Sotho @ 1.636
8 ASW30 + ASW30 + Bantu_N.E. + Bantu_S.W._Ovambo @ 1.636
9 ASW30 + ASW30 + Bantu_N.E. + Yoruba @ 1.636
10 ASW30 + ASW30 + Bantu_N.E. + YRI30 @ 1.636
11 ASW30 + ASW30 + Bantu_N.E. + Mandenka @ 1.667
12 ASW30 + ASW30 + Bantu_S.E._Zulu + LWK30 @ 1.672
13 ASW30 + ASW30 + Bantu_N.E. + Bantu_S.E._Zulu @ 1.676
14 ASW30 + ASW30 + LWK30 + Mandenka @ 1.700
15 ASW30 + ASW30 + Bantu_N.E. + Bantu_S.W._Herero @ 1.712
16 ASW30 + ASW30 + Bantu_S.W._Herero + LWK30 @ 1.712
17 ASW30 + ASW30 + Bantu_N.E. + Bantu_S.E._Tswana @ 1.721
18 ASW30 + ASW30 + Bantu_S.E._Tswana + LWK30 @ 1.723
19 ASW30 + ASW30 + Mandenka + Mandenka @ 1.815
20 ASW30 + ASW30 + Bantu_N.E. + Bantu_N.E. @ 1.824

8790320 iterations.

Done.

Elapsed time 4.4741 seconds.
Gedmatch.Com
Dodecad K7b Oracle-x Population Fitting
This program is based on Larry Smiser's Population Fitting spreadsheet.
Questions about the method or results should be sent to him at lwsmiser@gmail.com


Finished reading population data.
223 populations found.
7 population clusters.

Kit Number: F229750

Admix Results:

#
Population
Percent
1
South_Asian
0.25
2
West_Asian
1.56
3
Siberian
1.16
4
African
89.79
5
Southern
2.03
6
Atlantic_Baltic
5.21
7
East_Asian
0.00


Pct. Calc. Option 2

1
Mandenka
82.05%
2
Hungarians
7.57%
3
Bantu_S.E._Zulu
6.64%
4
Ethiopians
2.24%
5
Selkup
1.06%
6
Nganassan
0.15%
7
Brahmins_from_Uttaranchal
0.15%
8
Balochi
0.12%
9
Uzbeks
0.01%
10
French
0.01%

Total RMSD: 0.483099


Elapsed time 0.9928 seconds.

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